ReportingTools does not work with PFAMHyperGResult object
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jcorreadar • 0
@jcorreadar-6773
Last seen 7.1 years ago
United States

As Suárez-Fariñas reported before, I also tried to use publish function from ReportingTools and it can not recognize the object  of class  "PFAMHyperGResult".

The application of the function to an object from "PFAMHyperGResult"

> publish(object, Report, selectedIDs=probids, annotation.db="org.Hs.eg",
                       categorySize=2,
                       makePlot=TRUE)

 

is returning this error:     Error in if (dim(df)[1] < 1) { : argument is of length zero

reportingtools • 669 views
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@laurent-gatto-5645
Last seen 3 days ago
Belgium

You might need to re-install ReportingTools and AnnotationDbi - see [1] for details.

[1] https://stat.ethz.ch/pipermail/bioc-devel/2014-September/006266.html

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You might have to re-install more packages than that, actually: GOstats, Category, AnnotationDbi and
ReportingTools according to [1]. Thank you for bringing this up on Bioc-devek, James!

[1] https://stat.ethz.ch/pipermail/bioc-devel/2014-September/006268.html

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