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Question: Is there a way to revert from usedevel() mode in bioconductor
0
4.2 years ago by
skm7700
United States
skm7700 wrote:

Hi ,

I was trying to install a latest version of ggbio and in trying to do so I may have changed the bioconductor version from stable to use useDevel() mode of installing. Which did not solve my problem as most of the dependencies of ggbio are either broken in the devel version or fail to install. I was wondering if I could revert back from devel mode to the original mode so that I can make the packages that were working before and not working now (like GenomicsRanges) work again.

modified 4.2 years ago by Steve Lianoglou12k • written 4.2 years ago by skm7700
0
4.2 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:

useDevel(FALSE)

biocLite() # to reinstall the release version of packages

After this you should probably reinstall all packages that you had installed while you were in devel mode.

biocValid()

should tell you which packages those are.

ADD COMMENTlink modified 4.2 years ago by Laurent Gatto1.0k • written 4.2 years ago by Dan Tenenbaum ♦♦ 8.2k