Is there a way to revert from usedevel() mode in bioconductor
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skm770 • 0
@skm770-6777
Last seen 6.9 years ago
United States

Hi ,

I was trying to install a latest version of ggbio and in trying to do so I may have changed the bioconductor version from stable to use useDevel() mode of installing. Which did not solve my problem as most of the dependencies of ggbio are either broken in the devel version or fail to install. I was wondering if I could revert back from devel mode to the original mode so that I can make the packages that were working before and not working now (like GenomicsRanges) work again.

 

usedevel bioclite • 663 views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 7 months ago
United States

useDevel(FALSE)

biocLite() # to reinstall the release version of packages

 

After this you should probably reinstall all packages that you had installed while you were in devel mode.

 

biocValid()

 

should tell you which packages those are.

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