Question

champ package input

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bonafedeirene • 0

@bonafedeirene-6862

Last seen 9.5 years ago

Hi, I am analyzing Illumina 450k methylation data and I want to find different methylated regions using ChAMP package but I don't understand how start the analysis.(the input format) .could you help me please? I'm new to R and any advice will be appreciated Thanks in advance

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ADD COMMENT • link updated 9.5 years ago by Vincent J. Carey, Jr. 6.7k • written 9.5 years ago by bonafedeirene • 0

score 0 · Answer 1 · 2014-10-14

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Vincent J. Carey, Jr. 6.7k

@vincent-j-carey-jr-4

Last seen 5 weeks ago

United States

follow the instructions at

http://bioconductor.org/packages/release/bioc/html/ChAMP.html

and read

http://bioconductor.org/packages/release/bioc/vignettes/ChAMP/inst/doc/ChAMP.pdf

after that, when you have specific questions pose them with a detailed message and an informative subject line

ADD COMMENT • link 9.5 years ago Vincent J. Carey, Jr. 6.7k