Off topic:Vranges (somatic signature) VariantAnnotation
0
0
Entering edit mode
humaasif79 • 0
@humaasif79-6884
Last seen 9.5 years ago
Brazil

Hi all,
I tried to make VRanges and am getting this error
> library(VariantAnnotation)
> setwd("/home/asif/Downloads/Somatic_signature_testfiles")
> fl <- system.file('UVAcl1_haplotype_snps_only.vcf', package="VariantAnnotation")
vcf <- readVcf(fl, "human_hg19.fa")
Error in .io_check_exists(path(con)) : file(s) do not exist:
 ''
Can any body help me with this error.
i am using this manual Introduction to VariantAnnotation ,Valerie Obenchain, March 18, 2014
 is there any you tube video, any workshop video or tutorial how to construct VRanges
> Regards

 

software error variantannotation • 1.1k views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 876 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6