Hi, Does RMA affects mumber of cell files ? means, more cel files RMA can get better results because I have only 6 cel files. (3 Knockout vs 3 wild type) Or MAS 5 is better? thanks, Saurin -- |------------------------------------------------ | Bioinformatician | | Department of Cell Biology and Anatomy | Medical University of South Carolina (MUSC) | 173 Ashley Ave | Charleston,SC - 29407 (US) | | Email: jani@musc.edu | Phone: (843)792-5483 |------------------------------------------------

Hi Saurin, RMA works well with as little as two arrays. It is an interesting question how RMA compares to MAS if you have very many replicate arrays - has anyone ever looked at that? Best wishes Wolfgang <quote who="Saurin D. Jani"> > Hi, > > Does RMA affects mumber of cell files ? means, more cel files RMA can get > better > results because I have only 6 cel files. (3 Knockout vs 3 wild type) > Or MAS 5 is better? > > > thanks, > Saurin > > > > -- > |------------------------------------------------ > | Bioinformatician > | > | Department of Cell Biology and Anatomy > | Medical University of South Carolina (MUSC) > | 173 Ashley Ave > | Charleston,SC - 29407 (US) > | > | Email: jani@musc.edu > | Phone: (843)792-5483 > |------------------------------------------------ > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > ------------------------------------- Wolfgang Huber European Bioinformatics Institute European Molecular Biology Laboratory Cambridge CB10 1SD England Phone: +44 1223 494642 Http: www.dkfz.de/abt0840/whuber