Error message installing Lumi package
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Entering edit mode
@andreribeiro13-6993
Last seen 9.4 years ago
United Kingdom

Dear all,

I was trying to install lumi package in my computer, however I couldn't do that because of error messages during the installation process.

Messages were:

> biocLite("lumi")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.0 (BiocInstaller 1.16.0), R version 3.1.1.
Installing package(s) 'lumi'
trying URL 'http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/GenomicAlignments_1.2.0.zip'

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  cannot open URL 'http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/GenomicAlignments_1.2.0.zip'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 1336731 != reported length 1337048
2: In download.file(url, destfile, method, mode = "wb", ...) :
  cannot open: HTTP status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘GenomicAlignments’ failedtrying URL 'http://bioconductor.org/packages/3.0/bioc/bin/windows/contrib/3.1/lumi_2.18.0.zip'

Warning: unable to move temporary installation ‘\\ad.ucl.ac.uk\slms\Home3\rmhvlrr\Documents\R\win-library\3.1\file1ef81e8f4518\brew’ to ‘\\ad.ucl.ac.uk\slms\Home3\rmhvlrr\Documents\R\win-library\3.1\brew’

Warning: unable to move temporary installation ‘\\ad.ucl.ac.uk\slms\Home3\rmhvlrr\Documents\R\win-library\3.1\file1ef84db47278\rngtools’ to ‘\\ad.ucl.ac.uk\slms\Home3\rmhvlrr\Documents\R\win-library\3.1\rngtools’
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : 
  cannot open the connection
In addition: Warning messages:
1: In unzip(zipname, exdir = dest) : error 1 in extracting from zip file
2: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
  cannot open compressed file 'multtest/DESCRIPTION', probable reason 'No such file or directory'

Is there anyone that could me help on that?

 

software error • 1.5k views
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Entering edit mode
@james-w-macdonald-5106
Last seen 8 minutes ago
United States

It may be that your BiocInstaller version is out of date (it is looking for an outdated version of GenomicAlignments). Try

library(BiocInstaller)
biocLite()
biocLite("lumi")

And let us know if that helps.

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