Search
Question: Extract the optimized DNA sequence from a GeneGA instance
0
gravatar for tomas.bjorklund
2.5 years ago by
Sweden
tomas.bjorklund20 wrote:

I'm using the GeneGA package to optimize the codon utilization and secondary structure of a large list of DNA sequences. The program works as expected, but I have issues figuring out the GeneGA instance generated and the documentation is very sparse.... if I pipe the output of GeneGA to a GeneGA.results object, I can show the optimal sequence using the show(GeneGA.results) together with two other iterations and their free energy. However, I cannot figure out how to extract only the optimized DNA sequence for further analysis. Using GeneGA.results@seq I can see the original input sequence, but that is not all that useful.... I would need something similar for the optimal sequence and that appears not to be available.

I apologize if this is obvious, but I'm still learning R... 

Thanks'

ADD COMMENTlink written 2.5 years ago by tomas.bjorklund20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 259 users visited in the last hour