Question: error with many packages: "Error : .onLoad failed in loadNamespace() for ''"
gravatar for warren.anderson
3.9 years ago by
European Union
warren.anderson0 wrote:

I am getting the following error with several packages including and topGO:

Error : .onLoad failed in loadNamespace() for '', details:
  call: match.arg(synchronous, c("off", "normal", "full"))
  error: 'arg' must be NULL or a character vector
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/warren/R/i686-pc-linux-gnu-library/3.0/’

I am using a 32 bit ubuntu 14.04 LTS system with R 3.0.2. I am new to R and newer to Linux, so detail would be greatly appreciated.

ADD COMMENTlink modified 3.9 years ago by Martin Morgan ♦♦ 22k • written 3.9 years ago by warren.anderson0

It would be good to update your R to the latest release (3.1.2), which will also get you the latest Bioc (3.0) and likely also fix these problems.

ADD REPLYlink written 3.9 years ago by Laurent Gatto1.0k
gravatar for Martin Morgan
3.9 years ago by
Martin Morgan ♦♦ 22k
United States
Martin Morgan ♦♦ 22k wrote:

The problem is that the RSQLite package has changed. As a Linux user, your solutions are to either update to a current version of R / Bioconductor (I believe for your version of R you can follow the 'Upgrade Installed Bioconductor packages" on that page) or to install the previous version of RSQLite by downloading the RSQLite_0.11.4.tar.gz tar ball and installing it via install.packages("RSQLite_0.11.4.tar.gz", repos=NULL). The easiest route for Mac and Windows users is unfortunately to update to the current version of R / Bioconductor.

ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by Martin Morgan ♦♦ 22k
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