I am using DiffBind to determine differentially bound sites. When you extract the sites with dba.report, the GRanges object contains the mean concentrations of the two groups. Is there a way to also get the concentrations of the individual samples?

Hello Igor-

If you set bCounts=TRUEin the call to dba.report() the report will include the read scores for each sample in the contrast. Also, remember that the group concentrations are log2()'ed.

Cheers-

Rory