comisc in biomart
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Shi, Tao ▴ 720
@shi-tao-199
Last seen 7.1 years ago

Hi list,

Do you know what happened to CosmicMart in biomaRt?  It's gone.

Thanks!

Tao

 

biomaRt • 1.1k views
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@james-w-macdonald-5106
Last seen 1 day ago
United States

Looks like they set up a required registration: https://groups.google.com/forum/#!topic/biomart-users/-46uAPn709c, which I don't think biomaRt is set up to deal with.

 

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Shi, Tao ▴ 720
@shi-tao-199
Last seen 7.1 years ago

Hi Jim,

Thanks for the quick reply!  I saw that post, but it was earlier last year and thought they might have some work-around already.  Apperantly not.  It would be nice to bring the cosmic functionality back to biomaRt, unless there are other ways to query it from R.

Best,

Tao

 

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Looking closer, I don't see that there is a cosmic mart service any longer, unless it was somewhere other than https://cancer.sanger.ac.uk/cancergenome/projects/cosmic/. You could certainly register, download whatever data you are interested in, and then query directly.

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