I am trying to use ChIPQ, but it seems that my bamFiles are a bit different? I can not find the problem, I have tried to use a csv table and also a single sample and even using dba object from DiffBind , but I have always this error message:
[bam_index_load] fail to load BAM index.
Error: 16 errors; first error:
Error in value[[3L]](cond): failed to open BamFile: failed to load BAM index
I have a csv table with 16 samples. I guess is a problem with the index, should have indexed bam files then? any suggestion?
Thanks a lot!