When using both cumNormStat and cumNormStatFast, I receive the following warning:
In cumNormStat(obj) :
Low quantile estimate. Default value being used.
I understand the default value is 0.5. In the paper for metagenomeSeq, there's a citation that suggests using 0.75 for RNASeq data, but our data are shotgun metagenomic. My question is whether there's an "agreed upon" value for metagenomic data, or whether there's standard methods for determining what the best value would be.