Annotation for Agilent chip DesignID 39494 (one color array)
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felix.klein ▴ 150
@felixklein-6900
Last seen 3.3 years ago
Germany

Hello,

I was wondering if there is an annotation package for the Agilent chip DesignID 39494 on Bioconductor.

Under this number I could not find anything here:

http://bioconductor.org/packages/release/BiocViews.html#___AgilentChip

Kind regards,

Felix

agilent microarray annotation • 1.1k views
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@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia

I think you've already answered your own question as far as a Bioconductor annotation package is concerned.

There are other ways to access annotation of course: Agilent Feature Extraction output includes annotation columns in the same files as contain the intensities and this annotation can be read using (for example) the read.maimages function in the limma package.

Alternatively, see the GEO annotation files for this Agilent design:

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL17077

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL16699

 

 

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