Off topic:Error installing VariantAnnotation with bioconductor/devel_core
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kforner • 0
@kforner-7188
Last seen 9.1 years ago
Switzerland
docker run -ti bioconductor/devel_core:20150304 Rscript -e "biocLite('VariantAnnotation', suppressUpdates=TRUE)"

gives:

```

** preparing package for lazy loading
Creating a new generic function for ‘tabulate’ in package ‘VariantAnnotation’
Error in setMethod("rowRanges", "VCF", function(x, ..., fixed = TRUE) { :
  no existing definition for function ‘rowRanges’
Error : unable to load R code in package ‘VariantAnnotation’
ERROR: lazy loading failed for package ‘VariantAnnotation’
* removing ‘/usr/local/lib/R/library/VariantAnnotation’
* restoring previous ‘/usr/local/lib/R/library/VariantAnnotation’

The downloaded source packages are in
    ‘/tmp/RtmplbkU0q/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘VariantAnnotation’ had non-zero exit status

```

install variantannotation • 932 views
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