how to install bioconductor packages ? I'm unable to install any package from bioconductor. im using this in Win 7 home basic. please help me. -- output of sessionInfo(): > biocLite() BioC_mirror: http://bioconductor.org Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.2. Warning message: installed directory not writable, cannot update packages 'foreign', 'lattice', 'Matrix', 'mgcv' > biocLite(affy) Error in match(x, table, nomatch = 0L) : object 'affy' not found -- Sent via the guest posting facility at bioconductor.org.

----- Original Message ----- > From: "ashok raja balla [guest]" <guest at="" bioconductor.org=""> > To: bioconductor at r-project.org, ashokrajaballa at live.com > Cc: "affy Maintainer" <rafa at="" jhu.edu=""> > Sent: Wednesday, November 6, 2013 6:43:32 PM > Subject: [BioC] unable to install package > > > how to install bioconductor packages ? > I'm unable to install any package from bioconductor. > im using this in Win 7 home basic. please help me. > > -- output of sessionInfo(): > > > biocLite() > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version > 3.0.2. > Warning message: > installed directory not writable, cannot update packages 'foreign', > 'lattice', > 'Matrix', 'mgcv' This is just a warning and you can ignore it. > > biocLite(affy) > Error in match(x, table, nomatch = 0L) : object 'affy' not found > The correct command is: biocLite("affy") Note the quotation marks. Dan > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >

On 11/06/2013 06:43 PM, ashok raja balla [guest] wrote: > > how to install bioconductor packages ? > I'm unable to install any package from bioconductor. > im using this in Win 7 home basic. please help me. > > -- output of sessionInfo(): > >> biocLite() > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.2. > Warning message: > installed directory not writable, cannot update packages 'foreign', 'lattice', > 'Matrix', 'mgcv' >> biocLite(affy) try quoting the package name you would like to install biocLite("affy") This is how it is shown on the package landing page, e.g., http://bioconductor.org/packages/release/bioc/html/affy.html Martin > Error in match(x, table, nomatch = 0L) : object 'affy' not found > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793