Expresso command error
1
0
Entering edit mode
Lizhe Xu ▴ 210
@lizhe-xu-666
Last seen 9.6 years ago
I thought that the following command in previous version of BioC was working, but with new version I got an error. So I must be wrong, what should the correct command be? Thanks. > set<-expresso(data, normalize.method="invariantset", bg.correct.method="mas", pmcorrect.method="pmonly",summary.method="liwong") Error in expresso(data, normalize.method = "invariantset", bg.correct.method = "mas", : unused argument(s) (bg.correct.method ...) L
• 730 views
ADD COMMENT
0
Entering edit mode
@wolfgang-huber-3550
Last seen 3 months ago
EMBL European Molecular Biology Laborat…
Hi Lizhe Xu > I thought that the following command in previous version of BioC was working, but with new version I got an error. So I must be wrong, what should the correct command be? > Thanks. > > >>set<-expresso(data, normalize.method="invariantset", bg.correct.method="mas", pmcorrect.method="pmonly",summary.method="liwong") > > Error in expresso(data, normalize.method = "invariantset", bg.correct.method = "mas", : > unused argument(s) (bg.correct.method ...) > You could try typing "? expresso" and reading the manual page. If you do that, you will see that the argument is "bgcorrect.method". And as far as I know it has been so forever. Bw Wolfgang -- ------------------------------------- Wolfgang Huber European Bioinformatics Institute European Molecular Biology Laboratory Cambridge CB10 1SD England Phone: +44 1223 494642 Http: www.dkfz.de/abt0840/whuber
ADD COMMENT

Login before adding your answer.

Traffic: 698 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6