error in using confFile
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Entering edit mode
@sow19872003-7527
Last seen 9.1 years ago
European Union

Hi,

I am using the cellHTS2 package for my HTS screening. While trying to understand the file formats that I need to generate for the purpose, I tried to use the demo package files (cellHTS) that you have uploaded. While I tried to use the plateconf file that exists in the demo version, I get the following error

                                      
> x
cellHTS (storageMode: lockedEnvironment)
assayData: 21888 features, 2 samples 
  element names: Channel 1 
phenoData
  sampleNames: 1 2
  varLabels: replicate assay
  varMetadata: labelDescription channel
featureData
  featureNames: 1 2 ... 21888 (21888 total)
  fvarLabels: plate well controlStatus
  fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
state:  configured = FALSE
    normalized = FALSE
    scored = FALSE
    annotated = FALSE 
Number of plates: 57  
Plate dimension: nrow = 16, ncol = 24 
Number of batches: 1 
> x<-configure(x, descripFile="Description.txt", confFile="Plateconf.txt",path=datapath)
Error in (function (filename, path, nrPlate, nrWpP, ...)  : 
  Could not find all expected header rows ('Wells' and 'Plates') in plate configuration file 'Plateconf.txt'.

While I have modified the existing plateconf file to include the wells and plates. 

Wells    384    
Plates    57    
Plate    Well    Content
1    A01    other
1    A02    other
1    A03    sample
1    A04    sample
1    A05    sample
1    A06    sample
1    A07    sample
1    A08    sample
1    A09    sample
1    A10    sample
1    A11    sample
1    A12    sample

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