Question: riboSeqR: plotTranscript error
0
gravatar for antonvila.s
4.2 years ago by
Spain
antonvila.s0 wrote:

Hi,

I've been trying to plot the alignment of ribosome profiling reads over an individual transcript sequence with the plotTranscript function. I have no RNA-seq data in this case.

 

> plotTranscript("ENST00000588673", coordinates = GRCh38_ffCs@CDS, riboDat = GRCh38_riboDat, length = 29, cap = 200)
Error in segments(as.vector(bp)[start(tw)] - 1, ymax * (1.015 + ((start(tw) -  :
  object 'segcols' not found

 

best,

Antón

riboseqr • 482 views
ADD COMMENTlink modified 4.2 years ago by Thomas J Hardcastle180 • written 4.2 years ago by antonvila.s0
Answer: riboSeqR: plotTranscript error
0
gravatar for Thomas J Hardcastle
4.2 years ago by
United Kingdom
Thomas J Hardcastle180 wrote:

Patched in version 1.0.5; just uploaded to Bioconductor so should emerge in a day or two.

Thanks for the report.

Tom


-- 
Dr. Thomas J. Hardcastle

Senior Research Associate
Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom

ADD COMMENTlink written 4.2 years ago by Thomas J Hardcastle180
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 170 users visited in the last hour