Alien GO result from GOstats
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Yue Zhao • 0
@yue-zhao-7450
Last seen 9.0 years ago
China

Hi there,

I'm doing GO EA for cotton, and I constructed my own background data. However, something weird happened: from the GO result, I found a GO which doesn't exist in my own background GO at all!

The result:

      GOMFID       Pvalue  OddsRatio    ExpCount Count Size
1 GO:0016642 4.036879e-06        Inf 0.004072228     2    2

You see when I try find this GO in my go background file out of R or in R, it's both zero, like: 

> sum(goframeData[,1] == "GO:0016642")
[1] 0

 

Could anyone help me ? Thanks !!

 

Best,

yue

gostats • 942 views
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You will have to give more information than that. Can you come up with a self-contained example that shows the problem?

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