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Last seen 8.1 years ago
Thank you for taking the time to read this. I am relatively new at programming and bioinformatics, however I am currently working on a project to analyze Illumines 450k methylation idat files from the TCGA website.
For some reason, when I try to get the Beta Values of a preprocessQuantile mset , The output of getBeta(Mset) when converted to a csv has very poor format.
If anyone has any advice, suggestions, or can help me out It would be amazing and greatly appreciated!
What are you trying to do? What exactly does 'has a poor format' mean?
Please note that asking a very direct and concise question like
'I am trying to output the beta values after quantile normalizing using minfi, as a csv file for further processing, and I would like to have the data in a format like this:'
is much more likely to get a useful response.