Differential Analysis for gene expression from TCGA (Level 3)
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hudacdif • 0
@hudacdif-7474
Last seen 6.8 years ago
United Kingdom

Hi everyone, I am having a bit difficulties to start doing differential analysis. Can anybody help me on this? Below is my sample dataset which has been taken from TCGA level 3 gene expression dataset of GBM (Cancer). Rownames are the genes names (ID). 

limma microarray tcga • 4.3k views
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@steve-lianoglou-2771
Last seen 2 hours ago
United States

Please reference this thread for a few ways to work over TCGA RNA-seq data:

Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis

 

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The glioblastoma multiforme RNA expression measurement was almost exclusively done with microarrays. The example shown appears to be zero-centred microarray data.

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