Question: DESeq: all the padjs equals to 1
gravatar for 15150688610
3.1 years ago by
151506886100 wrote:
when I using DESeq with my samples(3 replicates each 2 conditions) ,I found that the padj of my final result are always 1.
And the pval is normal varying in 0.01-1 .

My complete code are:

cds <- newCountDataSet( countTable, condition )

cds<-estimateSizeFactors( cds )

cds<-estimateDispersions( cds )

res<-nbinomTest( cds, "untreated", "treated" )

I would really appreciate all the advice.Thank you very much.

ADD COMMENTlink modified 3.1 years ago by Michael Love17k • written 3.1 years ago by 151506886100
gravatar for Michael Love
3.1 years ago by
Michael Love17k
United States
Michael Love17k wrote:

I posted an answer here:

A: deseq: all padj values equal to 1

ADD COMMENTlink written 3.1 years ago by Michael Love17k
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