Search
Question: DESeq: all the padjs equals to 1
0
3.1 years ago by
China
151506886100 wrote:
when I using DESeq with my samples(3 replicates each 2 conditions) ,I found that the padj of my final result are always 1.
And the pval is normal varying in 0.01-1 .

My complete code are:

cds <- newCountDataSet( countTable, condition )

cds<-estimateSizeFactors( cds )

cds<-estimateDispersions( cds )

res<-nbinomTest( cds, "untreated", "treated" )

I would really appreciate all the advice.Thank you very much.

modified 3.1 years ago by Michael Love17k • written 3.1 years ago by 151506886100
0
3.1 years ago by
Michael Love17k
United States
Michael Love17k wrote: