Search
Question: DESeq: all the padjs equals to 1
0
gravatar for 15150688610
2.6 years ago by
China
151506886100 wrote:
when I using DESeq with my samples(3 replicates each 2 conditions) ,I found that the padj of my final result are always 1.
And the pval is normal varying in 0.01-1 .

My complete code are:

cds <- newCountDataSet( countTable, condition )

cds<-estimateSizeFactors( cds )

cds<-estimateDispersions( cds )

res<-nbinomTest( cds, "untreated", "treated" )

I would really appreciate all the advice.Thank you very much.

ADD COMMENTlink modified 2.6 years ago by Michael Love15k • written 2.6 years ago by 151506886100
0
gravatar for Michael Love
2.6 years ago by
Michael Love15k
United States
Michael Love15k wrote:

I posted an answer here:

A: deseq: all padj values equal to 1

ADD COMMENTlink written 2.6 years ago by Michael Love15k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 175 users visited in the last hour