I didn't see this in the documentation so I thought I'd ask here.
I was wondering whether there was any way to get more data about the merged regions from MEDIPS.mergeFrames. Specifically, I was thinking about pValue, absolute counts, rpkm, and log2FC. I'm assuming that these would be average values ... which would be fine. The researchers I'm working with are just looking for a table that has this information summarized so they can more quickly browse differentially methylated regions.
Is this possible, or will I need to write a script to run the calculations myself?