crlmm: RFC - new feature to work on subsets of CEL files
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Karl Forner ▴ 70
@karl-forner-2831
Last seen 4.7 years ago
Switzerland

Hi,

A very useful feature IMHO would be to be able to run crlmm analysis, both genotype and cnv on a subset of CEL files. It would allow to implement tests, and to run benchmarks much much faster.

It could be a probe_ids= or probeset_ids= extra arguments to genotype() and crlmm().

Some companion convenient functions such as fetch_probe_ids(by_chr=, ...) could leverage this new feature.

 

My use case is that I have unit tests to check my pipeline, and I need a minimum of CEL files otherwise crlmm complain, and it takes ages, so that I tends to undertest it.

 

Best regards,

Karl Forner

 

crlmm • 674 views
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