Error: could not find function "rlog"
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colaneri ▴ 30
@colaneri-7770
Last seen 5.0 years ago
United States

Hi I'm using DESeq2 to compare transcritome data. I want to run some clustering analysis and PCA and I started by rlog transforming the values of my dds object

i did

rld <- rlog(ddsFull)

and I got:

Error: could not find function "rlog"

I try with the rlogTransformation() comand but got the same error.

Can some one help with this?

 

 

 

deseq2 • 2.9k views
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@mikelove
Last seen 2 hours ago
United States

have you loaded library(DESeq2) yet?

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colaneri ▴ 30
@colaneri-7770
Last seen 5.0 years ago
United States

Shame of my, I loaded DESeq but not DESeq2. Now with DESeq2 I was able to transform the data. Thank!

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