Many thanks for your help. In fact, DiffBind is the first R based tool I use. I cannot run it without you & Rory’s continual support. However, I am really not familiar with R. After updating, I find that edgeR can be run well (DiffBind_fig1). I have installed GO.db based on your suggestion (DiffBind_fig2). But it still shows an error when I run DiffBind (DiffBind_fig3):
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ‘GO.db’
Error: package or namespace load failed for ‘DiffBind’
I note another different thing. Before updating, the X11 will be automatically started. Now, it doesn’t (DiffBind_fig3). Of course, I can manually open the X11, but it shows an xterm window I never see before (DiffBind_fig4). The X11 was downloaded from XQuartz on R webpage (DiffBind_fig4). I really need to run DiffBind again. Any suggestion is very welcome. Thanks you so much.
modified 4.4 years ago
4.5 years ago by
Gary • 20