‘GenomicFeatures’ is not available (for R version 3.2.0)
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jcotignola • 0
@jcotignola-8003
Last seen 8.9 years ago
Argentina

Dear all;

I recently upgraded my R to version 3.2.0, and since then I can't install the package "GenomicFeatures". I get the following warning:

Warning in install.packages :
  package ‘GenomicFeatures’ is not available (for R version 3.2.0)

 

Neither of I use install.packages("GenomicFeatures"), nor with biocLite("GenomicFeatures"). And therefore, I can't load the package to do my analyses.

Does anyone have any suggestions on how to overcome this?

Thank you very much.

J.

genomicfeatures • 3.4k views
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Please show the complete output of the biocLite("GenomicFeatures") command. 

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@guoxiaoyun99-8158
Last seen 7.2 years ago

I am having the same problem, with a few packages of Bioconductor. GenomicFeature is one of them, the following the full error message:

> biocLite("GenomicFeature")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.3), R version 3.2.0.
Installing package(s) ‘GenomicFeature’
Old packages: 'Matrix'
Update all/some/none? [a/s/n]: a
Warning in install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  'lib = "C:/Program Files/R/R-3.2.0/library"' is not writable
trying URL 'http://cran.fhcrc.org/bin/windows/contrib/3.2/Matrix_1.2-1.zip'
Content type 'application/zip' length 3616182 bytes (3.4 MB)
downloaded 3.4 MB

package ‘Matrix’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
        C:\Users\Xiaoyun\AppData\Local\Temp\RtmpKoQNA3\downloaded_packages
Warning message:
package ‘GenomicFeature’ is not available (for R version 3.2.0) 

 

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The name of the package is GenomicFeatures, not GenomicFeature.

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