Importing Bowtie result into R
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a.afshinfard ▴ 10
@aafshinfard-7617
Last seen 6.5 years ago
Iran, Islamic Republic Of

hi everyone

is there any way to read Bowtie alignment results into R automatically ?

specially i want alignment location and sequences in r

thanks

 

r bowtie • 999 views
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Are your alignments in BAM format?

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yes. SAM and BAM..

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Have you looked at the QuasR package (http://www.bioconductor.org/packages/release/bioc/vignettes/QuasR/inst/doc/QuasR.pdf, page 13, "using external BAM files)

Hans-Rudolf

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@sean-davis-490
Last seen 18 hours ago
United States

See the GenomicAlignments package.

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