I am trying to access a dataset from ArrayExpress with the ID "E-GEOD-33675", but I keep getting an error right after it tries to read pheno data from the sdrf file. Is this because I am doing something wrong (I am new to Bioconductor) or is it an issue with the dataset itself (and if so, how can I fix this)? The error message is "Error in .subset2(x, i, exact = exact) : subscript out of bounds", shown below in context. I seem to be able to fetch a few other datasets that I tried without any problem. Any help/suggestions/comments much appreciated. Thanks for your time.
> AEdata <- ArrayExpress("E-GEOD-33675") trying URL 'http://www.ebi.ac.uk/arrayexpress/files/A-GEOD-14799/A-GEOD-14799.adf.txt' Content type 'text/plain' length 24270 bytes (23 KB) downloaded 23 KB trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33675/E-GEOD-33675.sdrf.txt' Content type 'text/plain' length 20615 bytes (20 KB) downloaded 20 KB trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33675/E-GEOD-33675.idf.txt' Content type 'text/plain' length 6945 bytes downloaded 6945 bytes Copying raw data files trying URL 'http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-33675/E-GEOD-33675.raw.1.zip' Content type 'application/zip' length 2769721 bytes (2.6 MB) downloaded 2.6 MB Unpacking data files ArrayExpress: Reading pheno data from SDRF Error in .subset2(x, i, exact = exact) : subscript out of bounds