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yzu
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@yzu-1027
Last seen 9.6 years ago
Dear All:
Significance Analysis of Microarrays(SAM)
As we know sam do multiple t.test as following
## Default S3 method:
t.test(x, y = NULL, alternative = c("two.sided", "less",
"greater"),mu =
0,
paired = FALSE, var.equal = FALSE,conf.level = 0.95, ...)
var.equal: a logical variable indicating whether to treat the two
variances
as being equal. If 'TRUE' then the pooled variance is used to
estimate the
variance otherwise the Welch (or Satterthwaite) approximation to the
degrees
of freedom is used.
We are curious why sam in package siggenes do not have var.equal
option ?
Are there some reason ?
sam(data,cl,B=100,balanced=FALSE,mat.samp=NULL,delta=(1:10)/5,med.fdr
=TRUE,s
0=NA,alpha.s0=seq(0,1,.05),include.s0=TRUE,p0=NA,lambda.p0=1,vec.lamb
da.p0=(
0:95)/100,
na.rm=FALSE,graphic.fdr=TRUE,thres.fdr=seq(0.5,2,0.5),ngenes=NA,itera
tion=3,
initial.delta=c(.1,seq(.2,2,.2),4),rand=NA)
Any help is greatly appreciated.
Sincerely. Liu Yu Ting
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