We have been using cn.mops to run CNV analysis on a whole genome sequencing dataset. Is it possible to extract the data from the CNVDetectionResult object which is used to plot the graph seen through segplot?
We are unsure which CNVDetectionResult Method is appropriate to extract the true copy number variant we are looking for. We are looking to create a dataset which will be used to scan for genomic copy number variants and includes predicted copy number and genomic position.
Thanks for the replies in advance!