Question: Problems with autosomalRecessiveHomozygous
gravatar for claire.simpson
4.3 years ago by
claire.simpson0 wrote:


I'm using autosomalRecessiveHomozygous to filter my sequence data and getting the following error message:

Error in if (any(slenVcf != slenBSgenome)) { : 
  missing value where TRUE/FALSE needed

I suspect the problem may be with my VCF file since the examples run fine, but don't know what the problem is in order to fix it. Any insight would be very helpful.

Many thanks,



variantfiltering • 544 views
ADD COMMENTlink written 4.3 years ago by claire.simpson0

Could you post the code you are trying, a few lines from your data, VCF file, and the output of sessionInfo()?

ADD REPLYlink written 4.3 years ago by Sean Davis21k
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