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Question: hyperGTest for MSigDB categories
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gravatar for petyuk
2.3 years ago by
petyuk60
United States
petyuk60 wrote:

Can anyone help with a (proper) way of testing for MSigDB categories enrichment using hypergeometric test?

I am looking something along the lines like we do testing for GO/KEGG/PFAM categories first by creating an instance of HyperGParams subclass (e.g. GOHyperGParams or KEGGHyperGParams) and then calling hyperGTest method.

HyperGParams class is virtual and there are no subclasses like MSigDBHyperGParams or BroadHyperGParams.

Thanks,

Vlad

 

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