hyperGTest for MSigDB categories
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petyuk ▴ 70
@petyuk-7261
Last seen 19 months ago
United States

Can anyone help with a (proper) way of testing for MSigDB categories enrichment using hypergeometric test?

I am looking something along the lines like we do testing for GO/KEGG/PFAM categories first by creating an instance of HyperGParams subclass (e.g. GOHyperGParams or KEGGHyperGParams) and then calling hyperGTest method.

HyperGParams class is virtual and there are no subclasses like MSigDBHyperGParams or BroadHyperGParams.

Thanks,

Vlad

 

category gostats msigdb hypergeometric test • 884 views
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