Question: Problem Installing SCAN.UPC
0
gravatar for Vani
4.2 years ago by
Vani20
United States
Vani20 wrote:

Hi,

I am getting errors when I try to install the bioconductor package SCAN.UPC. I am using R version 3.2.0.

When I run this command:

source("http://bioconductor.org/biocLite.R")
biocLite("SCAN.UPC")

I get this error:

The downloaded source packages are in

‘/tmp/Rtmp7yK0L2/downloaded_packages’

Warning messages:

1: In install.packages(pkgs = doing, lib = lib, ...) :

  installation of package ‘SCAN.UPC’ had non-zero exit status

2: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :

  installation of package ‘lme4’ had non-zero exit status

 

Then when I try to load the SCAN.UPC library:

library(SCAN.UPC)

I get this error:

Error in library(SCAN.UPC) : there is no package called ‘SCAN.UPC’

 

Here is the session Info:

R version 3.2.0 (2015-04-16)

Platform: x86_64-unknown-linux-gnu (64-bit)

Running under: Ubuntu 14.10


locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              

 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    

 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   

 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 

 [9] LC_ADDRESS=C               LC_TELEPHONE=C            

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base 

Please Advise

ADD COMMENTlink written 4.2 years ago by Vani20
1

Hmmm...the "lme4" package must be somewhere in the dependency chain. First, will you please upgrade to R version 3.2.1 and then try installing?

ADD REPLYlink written 4.2 years ago by Stephen Piccolo560

It worked with the new version of R (3.2.1)!

ADD REPLYlink written 4.2 years ago by Vani20
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