My query is regarding the"Methods to Work Across Multiple Ontologies" in ontoCAT_1.20.0 installed on R3.2.1 with rJava_0.9-7 package.

I am not able to access any of the batch related functions a few of them are listed below. These functions have been listed in the manual though.......

1) batch <- getEFOBatch() 

2) searchTermInBioportal(batch,"thymus"

3) searchTermInOLS(batch,"thymus")

4) addOntology(batch,"http://purl.org/biotop/biotop.owl")

5) listLoadedOntologies(batch)

6) ontology <- getOntologyFromBatch(batch,"EFO")

Can you please let me know how can I get access to these functions ?

Thanks & Regards,

Mugdhaa

Hi Mugdhaa,

Unfortunately, we do not support "Methods to work across multiple ontologies" any more, since the Bioportal and OLS interfaces have been changed and we don't have enough personnel to follow their changes.

Sorry for inconveniences.

Regards,

Natalja