Question: Error when using write.table() with SCAN.UPC ESET
0
gravatar for Vani
4.2 years ago by
Vani20
United States
Vani20 wrote:

Hi,

 

I am getting an error when I try to save an eset generated by SCAN.UPC  using write.table.

Here is my code:

gse53080 <- getGEO('GSE53080',GSEMatrix = TRUE)

write.table(gse53080, file = "NormalizedGSE53080.txt", sep = "\t")

 

Here is the error:

Error in data.frame(`GSE53080-GPL10999_series_matrix.txt.gz` = <S4 object of class "ExpressionSet">,  : 

  arguments imply differing number of rows: 35, 150

Calls: write.table ... as.data.frame -> as.data.frame.list -> eval -> eval -> data.frame

Execution halted

 

Please advise on how I should fix this.

 

scan.upc write.table • 518 views
ADD COMMENTlink written 4.2 years ago by Vani20

Can you indicate why you think the above command should work? Are you following a particular work flow (if so, which, specifically?)

ADD REPLYlink written 4.2 years ago by Martin Morgan ♦♦ 23k
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