I am trying to use SCAN.UPC to normalize a dataset. Whenever I run the command
normalized = SCAN("GSE46224")
I get the error:
Error in downloadFromGEO(celFilePattern, expectedFileSuffixPattern = "*.CEL.gz") : No raw data files could be downloaded from GEO for GSE46224
I checked on the geo site and cel files do exist for this dataset. I encountered this same issue with the GSE53080 dataset as well.