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Question: Get data frame of CNV calls from Seglist object
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gravatar for Cian Murphy
2.3 years ago by
Cian Murphy40
United Kingdom
Cian Murphy40 wrote:

I used runDNAcopy and then merged states to give me my seglist object: 

 

> class(dat)
[1] "SegList"
attr(,"package")
[1] "snapCGH"
> ls(dat)
[1] "genes"       "method"      "M.observed"  "M.predicted" "num.states"  "state"
>

It plots the graphs fine, with segmentation lines and all. What I woudl like though is  a summary table of the sample and exact locations of calls. Should be easy enough to do as this data is in the plots. 

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by Cian Murphy40
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