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Hello,
I'm interested in getting the GO and KEGG miRNA from Agilent microarray.
I analysed the microarrays, and I obtained that genes are over and less expressed with Limma.
The problem is that I don't know how can continue for get the GO and KEGG. Any help?
Thank you very much, Santi.
The more information you provide, the better the chance that someone can help. You don't give much detail about what you have tried and what your end analysis goals are.
If you're trying to find a Bioconductor package appropriate for pathway analysis you can use the biocViews interface:
http://www.bioconductor.org/packages/release/BiocViews.html#___Pathways
This post from Gordon talks about pathway analysis in general, and may be useful background.
Packages for GO and KEGG analysis on RNAseq data
Valerie