I recently had to reformat my mac to get the OSX Yosemite. Now I run into the problem that the oligo package does not work.
The reason seems to be that for the .CEL files that I am using (at the read.celfiles step) the oligo package requires the annotation package pd.ht.mg.430.pm, which is not in the repository (anymore?): https://www.bioconductor.org/packages/release/data/annotation/
Has anybody run into this problem? The 430 PM it is a very common affymetrix platform that did not cause any problems in the oligo package before (I am using unchanged R script that was previously working).
Any comments/suggestions are welcomed. I am on the brink of trying figuring out how to build my own annotation package from here:http://www.bioconductor.org/packages/release/bioc/vignettes/pdInfoBuilder/inst/doc/BuildingPDInfoPkgs.pdf