Problem in MEtShot install_ mzR /Rcpp version
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gip • 0
@gip-8897
Last seen 5.8 years ago
European Union

Hi!
I was tring to install
install_github("sneumann/MetShot")
to finally install install_github("stanstrup/convert.waters.raw")

I get this error:

* installing *source* package 'MetShot' ...
** R
** inst
** tests
** preparing package for lazy loading
Advarsel i fun(libname, pkgname) :
  mzR has been built against a different Rcpp version (0.11.6)
than is installed on your system (0.12.1). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.

** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Advarsel i library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
  there is no package called 'MetShot'
Fejl: loading failed
Kørsel stoppet
ERROR: loading failed
* removing '\\a00143.science.domain/bcg795/Documents/R/win-library/3.2/MetShot'
Error: Command failed (1)


My sessionInfo() is

R version 3.2.2 (2015-08-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=Danish_Denmark.1252  LC_CTYPE=Danish_Denmark.1252    LC_MONETARY=Danish_Denmark.1252
[4] LC_NUMERIC=C                    LC_TIME=Danish_Denmark.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.18.4 devtools_1.9.1      

loaded via a namespace (and not attached):
[1] httr_1.0.0    R6_2.1.1      magrittr_1.5  tools_3.2.2   curl_0.9.3    memoise_0.2.1 stringi_0.5-5 stringr_1.0.0
[9] digest_0.6.8 

 

Should I downgrade Rcpp version?

 

Thank you

mzR Rcpp • 1.1k views
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Entering edit mode

I am not sure if the mzR warning you get is the problem (I will still commit a fix to get rid of it later today). The (or one) issue, however, is clearly there is no package called 'MetShot'. I tried installing devtools::install_github("sneumann/MetShot"), which worked on my computer.

Could you load, or if not available, install the following dependencies and start again: CAMERA, xcms, XML, class and Biobase.

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Entering edit mode

For the record, a new version of mzR (2.3.3 in devel and 2.2.2 in release) that uses the latest Rcpp should become available within 24 hours.

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