I went through the whole workflow and I would like to print tables with the data in results and fcf objects. How can I do that?
One table could include sample wise information with zscores, p-values, counts and the other with the differences between conditions. I have 2 reps for each of the 3 conditions.
Ideally, I would like to see the peaks/interactions with chr and coordinates (chr, start, end).
Is there an easy way to add the closest or overlapped feature in the genome? using TxDb.Hsapiens.UCSC.hg19.knownGene?
As far I understand this method only looks at interactions within the same chromosome (no trans interactions) right?
I am not an expert on R as you noticed.
Thank you very much for your time and help,