I'm trying to install DESex2 1.8.2 on my computer (Mac OS 10.10.5) and got next mistake:
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.4), R version 3.2.2.
Installing package(s) ‘DESeq2’
also installing the dependency ‘RcppArmadillo’
trying URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.2/RcppArmadillo_0.5.600.2.0.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.2/RcppArmadillo_0.5.600.2.0.tgz'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
cannot open: HTTP status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘RcppArmadillo’ failed
trying URL 'http://bioconductor.org/packages/3.1/bioc/bin/macosx/mavericks/contrib/3.2/DESeq2_1.8.1.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'http://bioconductor.org/packages/3.1/bioc/bin/macosx/mavericks/contrib/3.2/DESeq2_1.8.1.tgz'
In addition: Warning message:
In download.file(url, destfile, method, mode = "wb", ...) :
cannot open: HTTP status was '404 Not Found'
Warning in download.packages(pkgs, destdir = tmpd, available = available, :
download of package ‘DESeq2’ failed
Please find below the information about R version I'm using, as well as packages installed on my computer:
R version 3.2.2 (2015-08-14)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.5 (Yosemite)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] DESeq_1.20.0 lattice_0.20-33 locfit_1.5-9.1 Biobase_2.28.0
[5] edgeR_3.10.3 limma_3.24.15 ShortRead_1.26.0 GenomicAlignments_1.4.1
[9] Rsamtools_1.20.4 GenomicRanges_1.20.8 GenomeInfoDb_1.4.3 Biostrings_2.36.4
[13] XVector_0.8.0 IRanges_2.2.7 S4Vectors_0.6.6 BiocParallel_1.2.21
[17] BiocGenerics_0.14.0 BiocInstaller_1.18.4
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.30.1 splines_3.2.2 zlibbioc_1.14.0 xtable_1.7-4 hwriter_1.3.2
[6] tools_3.2.2 grid_3.2.2 DBI_0.3.1 latticeExtra_0.6-26 genefilter_1.50.0
[11] lambda.r_1.1.7 futile.logger_1.4.1 survival_2.38-3 geneplotter_1.46.0 RColorBrewer_1.1-2
[16] futile.options_1.0.0 bitops_1.0-6 RSQLite_1.0.0 XML_3.98-1.3 annotate_1.46.1
I also cannot install RcppArmadillo independently:
install.packages('RcppArmadillo')
trying URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.2/RcppArmadillo_0.5.600.2.0.tgz'
Warning in install.packages :
cannot open: HTTP status was '404 Not Found'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.2/RcppArmadillo_0.5.600.2.0.tgz'
Warning in install.packages :
download of package ‘RcppArmadillo’ failed
I hope somebody can help me and advice what should I do?
