I have an old problem that i put aside at each time. I search but i never found a valid reponse for me. My script to normalize array data use the affy package but it only work with the 2.15 version of R. When i use it with version 3.x it always display the same error above:
The affy package is not designed for this array type.
Please use either the oligo or xps package.
So why the affy package did not run with new versions of R and why it tell me that it is array type problem ? I only use the list.celfile() and ReadAffy() functions. I think i missed something ?
More the affy package seems to still work because it is still mention in the updated limma userguide for analyzing single channel affymetrix array.
More the 2.15 version of R dont work with new versions of MacOS so impossible to use my script with macOS.
Thank you for your answers!