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Question: ShortRead Error in slot(object, ".srlist")
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gravatar for sbrown36
2.1 years ago by
sbrown360
United States
sbrown360 wrote:

Hello,

I am an extremely new used to R and Bioconductor. I am trying to use ReadShort, and keep coming up with this error. Is there an easy fix to this, and something that is just a stupid mistake?

Thank you,

Sarah

> library(ShortRead)
> fls <- dir("~/woodratGenome", "*fastq$", full=TRUE)
> qaSummary <- qa(fls, type="fastq")
Error in slot(object, ".srlist") :
  cannot get a slot (".srlist") from an object of type "list"
ADD COMMENTlink modified 2.1 years ago by Martin Morgan ♦♦ 20k • written 2.1 years ago by sbrown360

Hi Sarah -- can you update your post to include the output of the sessionInfo() command, and then make a comment here, please?

ADD REPLYlink written 2.1 years ago by Martin Morgan ♦♦ 20k

Martin,

I figured it out. I somehow had loaded packages under different versions of R.

It is working now! Thank you

Sarah

ADD REPLYlink written 2.1 years ago by sbrown360
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