Question: How to find DMRs using probe-lasso from ChAMP using minfi data
3.2 years ago by
AST • 50
AST • 50 wrote:
I have been trying to find DMRs from minfi normalized data using probe lasso() function of ChAMP package, but every time I am facing problem.
pdata <- pData(rgSetEx) mSetS <- preprocessSWAN(rgSetEx) betaS <- getBeta(mSetS) lasso <- champ.lasso(beta.norm = betaS, pd = pdata) "There is an error in this dataset"
Can someone please suggest if there is a way by which I can run lasso() on minfi data.
ADD COMMENT • link •