4.1 years ago by
Thank you for your response. I am trying to do an analysis on the copy number data from the TARGET project (https://target.nci.nih.gov/dataMatrix/). The Neuroblastoma (NBL) project has copy number data on an Illumina 550K chip and I am trying to do an analysis on that. However, these idat files are controlled access and I cannot share them.
This is not methylation data, I only tried to use that because I wanted to get a hang of CRLMM using some public data so that I can share results if I face problems. However, I now realize that I was testing on a dataset that is not close to my actual dataset.
Could you please provide me some guidance on how to use CRLMM for these NBL datasets, such as which cdf to use?