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Question: Problem installing latest Bioconductor version
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gravatar for vassily
2.1 years ago by
vassily0
Russian Federation
vassily0 wrote:

I can't install bioconductor:

> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.0), ?biocLite for help
> biocLite()
'no packages in repository (no internet connection?)' while trying https://bioconductor.org/packages/3.2/bioc, trying
  https://bioconductor.org/packages/3.1/bioc
Error: no packages in repository (no internet connection?)

 

> library(BiocInstaller)
> biocValid()
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/src/contrib
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/data/annotation/src/contrib
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/data/experiment/src/contrib
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/extra/src/contrib
[1] TRUE

> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: i386-w64-mingw32/i386 (32-bit)
Running under: Windows XP (build 2600) Service Pack 3

locale:
[1] LC_COLLATE=Russian_Russia.1251  LC_CTYPE=Russian_Russia.1251    LC_MONETARY=Russian_Russia.1251
[4] LC_NUMERIC=C                    LC_TIME=Russian_Russia.1251    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.20.0

loaded via a namespace (and not attached):
[1] tools_3.2.2

Could anyone help me to resolve this error?

ADD COMMENTlink written 2.1 years ago by vassily0
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