The Bioconductor provides the
BSgenome.Ggallus.UCSC.galGal4 from the following command to be used on different approaches:
source("https://bioconductor.org/biocLite.R") biocLite("BSgenome.Ggallus.UCSC.galGal4") library(BSgenome.Ggallus.UCSC.galGal4)
We are looking to launch a new analysis approach of the reduced-genome. But for that, we need a Bioconductor "reduced-reference genome" on the same format as provided by the Bioconductor genome, in order to use the tools already available for analysis. Our idea is to create this genome from a merged alignment of 20 animals subjected to this reduced representation methodology.
Would it be possible?