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Question: (Closed) Issues connecting with R 3.2.2 to source("http://bioconductor.org/biocLite.R")
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gravatar for frostbite907
3.1 years ago by
frostbite9070 wrote:

Hello,

I am trying to setup Spade for FlowJo using the following instructions.

http://docs.flowjo.com/vx/advanced-features/spade-flowjo/ 

When I run R 3.2.2 it tells me that there the current version is not supported. When I try R 3.2.1 everything seems to go fine until I test with the library(spade) command which generates 4 warning and an error about needing to use 3.2.2.

I am running this on Windows XP SP 3 32 bit.

 

> source("https://bioconductor.org/biocLite.R")
Error in file(filename, "r", encoding = encoding) : 
  cannot open the connection
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
  InternetOpenUrl failed: 'The connection with the server was reset'
> source("http://bioconductor.org/biocLite.R")
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/src/contrib
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/bin/windows/contrib/3.2
'biocLite.R' failed to install 'BiocInstaller', use
  'install.packages("BiocInstaller",
  repos="https://bioconductor.org/packages/3.1/bioc")' or
  'install.packages("BiocInstaller",
  repos="http://bioconductor.org/packages/3.1/bioc")'
Warning message:
package ‘BiocInstaller’ is not available (for R version 3.2.2) 

 

ADD COMMENTlink written 3.1 years ago by frostbite9070

Hello frostbite907!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.1 years ago by James W. MacDonald48k
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