Hello,
I am trying to setup Spade for FlowJo using the following instructions.
http://docs.flowjo.com/vx/advanced-features/spade-flowjo/
When I run R 3.2.2 it tells me that there the current version is not supported. When I try R 3.2.1 everything seems to go fine until I test with the library(spade) command which generates 4 warning and an error about needing to use 3.2.2.
I am running this on Windows XP SP 3 32 bit.
> source("https://bioconductor.org/biocLite.R")
Error in file(filename, "r", encoding = encoding) :
cannot open the connection
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
InternetOpenUrl failed: 'The connection with the server was reset'
> source("http://bioconductor.org/biocLite.R")
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/src/contrib
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/bin/windows/contrib/3.2
'biocLite.R' failed to install 'BiocInstaller', use
'install.packages("BiocInstaller",
repos="https://bioconductor.org/packages/3.1/bioc")' or
'install.packages("BiocInstaller",
repos="http://bioconductor.org/packages/3.1/bioc")'
Warning message:
package ‘BiocInstaller’ is not available (for R version 3.2.2)
>